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Software and Tools for Fitting CO2 and Light Response Curves

Writer's picture: Scense MeScense Me

Updated: Dec 16, 2024

Landflux CO2 Response Curve Fitting Tool
Landflux CO2 Response Curve Fitting Tool

Installing-Setting UP A/Ci Curve Fitting Tool


Fitting the FvCB model to CO2 Response Curves

Peer-reviewed Literature

  1. Microsoft Excel spreadsheet from Sharkey, 2015:

  2. https://doi.org/10.1111/pce.12641

  3. SAS program from Dubois et al., 2007:

  4. https://doi.org/10.1111/j.1469-8137.2007.02182.x

  5. Web-based Exhaustive Dual Optimization (EDO) approach from Gu et al., 2010:

  6. https://leafweb.org


Combined Gas Exchange and Chlorophyll Fluorescence Data

  1. Excel spreadsheet from Bellasio et al., 2015:

  2. https://doi.org/10.1111/pce.12560

  3. Excel spreadsheet from Mouleau-Ngangue et al., 2017:

  4. https://doi.org/10.1111/nph.14260


Other Software Resources

  1. Excel spreadsheet:

    https://www.life.illinois.edu/bernacchi/links.html

  2. Excel spreadsheet

    https://landflux.org/tools.

    if ladflux.org is down, download the CO2 fitting tool here


Example of CO2 Response Curve using ACi Curve Fitting tool from Landflux


  1. R code

    https://www.fridleylab.org/protocols

  2. R code 'photosynthesis' with modeling tools for C3 photosynthesis with analytic tools for curve-fitting plant ecophysiology responses.

    https://github.com/cdmuir/photosynthesis


Fitting Models to Light Response Curves

Peer-reviewed Literature

  1. Microsoft Excel spreadsheet from Lobo et al., 2013:

  2. https://doi.org/10.1007/s11099-013-0045-y


Other Software Resources

  1. R code:

    https://www.fridleylab.org/protocols

  2. R code 'photosynthesis' with modeling tools for C3 photosynthesis with analytic tools for curve-fitting plant ecophysiology responses.

    https://github.com/cdmuir/photosynthesis

  3. Excel spreadsheet

    https://landflux.org/tools


Reference

  1. Farquhar, G.D., von Caemmerer, S. and Berry, J.A. (1980). A biochemical model of photosynthetic CO2 assimilation in leaves of C3 species. Planta, [online] 149(1), pp.78–90. doi:https://doi.org/10.1007/bf00386231

  2. https://www.licor.com/env/support/LI-6800/topics/software-for-curve-fitting.html

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